PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000242G1390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 263aa    MW: 28512.1 Da    PI: 9.1207
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000242G1390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1892142256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr +  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ kl+ge
  PH01000242G1390  92 LYRGVRLRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAYKLRGE 142
                      59****998.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.13E-2891149No hitNo description
SMARTSM003804.5E-3192155IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-2292149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-2992149IPR001471AP2/ERF domain
PROSITE profilePS5103222.61692149IPR001471AP2/ERF domain
PRINTSPR003671.2E-1193104IPR001471AP2/ERF domain
PfamPF008479.8E-1393142IPR001471AP2/ERF domain
PRINTSPR003671.2E-11131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDASLRTLSP ASFPGEVRSA VSSLLLSPGA SSLDTVFSHL PPPVTIPPLG SSVYNRQSEL  60
LRHFAASQAQ STASSSSAAN FPAADDGAPR KLYRGVRLRQ WGKWVAEIRL PQNRVRVWLG  120
TYDSPETAAH AYDRAAYKLR GEYARLNFPG VMDGPDCPDN LRQLRAAIDA KIQAIRVRLA  180
RKRARARRQP EESKENPCTE GAKAPAAARP VVSEGATSET TTTSSYGSPD GVLSVSAASA  240
DAECLLERMP SFDPELIWEM LNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1788149163ATERF1
3gcc_A4e-1788149163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185ARKRARA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0927080.0FP092708.1 Phyllostachys edulis cDNA clone: bphyem112j04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638431.11e-125PREDICTED: ethylene-responsive transcription factor ERF061
TrEMBLA0A0M4L9611e-148A0A0M4L961_9POAL; DREB2A
STRINGORGLA03G0412600.11e-126(Oryza glaberrima)
STRINGORGLA05G0229700.11e-126(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.16e-32ERF family protein